recipe bioconductor-schex

Hexbin plots for single cell omics data

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/schex.html

License:

GPL-3

Recipe:

/bioconductor-schex/meta.yaml

Builds hexbin plots for variables and dimension reduction stored in single cell omics data such as SingleCellExperiment and SeuratObject. The ideas used in this package are based on the excellent work of Dan Carr, Nicholas Lewin-Koh, Martin Maechler and Thomas Lumley.

package bioconductor-schex

(downloads) docker_bioconductor-schex

versions:

1.16.0-0,  1.14.0-0,  1.12.0-0,  1.8.0-0,  1.5.0-0,  1.4.0-1,  1.4.0-0,  1.2.0-0,  1.0.0-0

depends bioconductor-singlecellexperiment:

>=1.24.0,<1.25.0

depends r-base:

>=4.3,<4.4.0a0

depends r-cluster:

depends r-concaveman:

depends r-dplyr:

depends r-entropy:

depends r-ggforce:

depends r-ggplot2:

>=3.2.1

depends r-hexbin:

depends r-scales:

depends r-seurat:

depends r-shiny:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-schex

and update with::

   mamba update bioconductor-schex

To create a new environment, run:

mamba create --name myenvname bioconductor-schex

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-schex:<tag>

(see `bioconductor-schex/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-schex/README.html)