recipe bioconductor-schot

single-cell higher order testing

Homepage

https://bioconductor.org/packages/3.14/bioc/html/scHOT.html

License

GPL-3

Recipe

/bioconductor-schot/meta.yaml

Single cell Higher Order Testing (scHOT) is an R package that facilitates testing changes in higher order structure of gene expression along either a developmental trajectory or across space. scHOT is general and modular in nature, can be run in multiple data contexts such as along a continuous trajectory, between discrete groups, and over spatial orientations; as well as accommodate any higher order measurement such as variability or correlation. scHOT meaningfully adds to first order effect testing, such as differential expression, and provides a framework for interrogating higher order interactions from single cell data.

package bioconductor-schot

Versions

1.6.0-0,  1.4.0-0,  1.2.0-1,  1.2.0-0,  1.0.0-0

Depends

• bioconductor-biocparallel >=1.28.0,<1.29.0

• bioconductor-iranges >=2.28.0,<2.29.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• bioconductor-singlecellexperiment >=1.16.0,<1.17.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• r-base >=4.1,<4.2.0a0

• r-ggforce

• r-ggplot2

• r-igraph

• r-matrix

• r-reshape

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-schot

and update with:

conda update bioconductor-schot

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-schot:<tag>

(see bioconductor-schot/tags for valid values for <tag>)

Download stats

Link to this page

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