recipe bioconductor-schot

single-cell higher order testing

Homepage

https://bioconductor.org/packages/3.11/bioc/html/scHOT.html

License

GPL-3

Recipe

/bioconductor-schot/meta.yaml

Single cell Higher Order Testing (scHOT) is an R package that facilitates testing changes in higher order structure of gene expression along either a developmental trajectory or across space. scHOT is general and modular in nature, can be run in multiple data contexts such as along a continuous trajectory, between discrete groups, and over spatial orientations; as well as accommodate any higher order measurement such as variability or correlation. scHOT meaningfully adds to first order effect testing, such as differential expression, and provides a framework for interrogating higher order interactions from single cell data.

package bioconductor-schot

Versions

1.0.0-0

Depends

• bioconductor-biocparallel >=1.22.0,<1.23.0

• bioconductor-iranges >=2.22.0,<2.23.0

• bioconductor-s4vectors >=0.26.0,<0.27.0

• bioconductor-singlecellexperiment >=1.10.0,<1.11.0

• bioconductor-summarizedexperiment >=1.18.0,<1.19.0

• r-base >=4.0,<4.1.0a0

• r-ggforce

• r-ggplot2

• r-igraph

• r-matrix

• r-reshape

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-schot

and update with:

conda update bioconductor-schot

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-schot:<tag>

(see bioconductor-schot/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-schot/README.html)