- recipe bioconductor-scmerge
scMerge: Merging multiple batches of scRNA-seq data
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/scMerge.html
- License:
GPL-3
- Recipe:
Like all gene expression data, single-cell RNA-seq (scRNA-Seq) data suffers from batch effects and other unwanted variations that makes accurate biological interpretations difficult. The scMerge method leverages factor analysis, stably expressed genes (SEGs) and (pseudo-) replicates to remove unwanted variations and merge multiple scRNA-Seq data. This package contains all the necessary functions in the scMerge pipeline, including the identification of SEGs, replication-identification methods, and merging of scRNA-Seq data.
- package bioconductor-scmerge¶
-
- Versions:
1.14.0-0
,1.10.0-0
,1.8.0-0
,1.6.0-1
,1.6.0-0
,1.4.0-0
,1.2.0-0
,1.0.0-1
- Depends:
bioconductor-biocparallel
>=1.32.0,<1.33.0
bioconductor-biocsingular
>=1.14.0,<1.15.0
bioconductor-delayedarray
>=0.24.0,<0.25.0
bioconductor-delayedmatrixstats
>=1.20.0,<1.21.0
bioconductor-m3drop
>=1.24.0,<1.25.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-singlecellexperiment
>=1.20.0,<1.21.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-scmerge
and update with:
conda update bioconductor-scmerge
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-scmerge:<tag>
(see bioconductor-scmerge/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-scmerge/README.html)