recipe bioconductor-scmerge

Like all gene expression data, single-cell RNA-seq (scRNA-Seq) data suffers from batch effects and other unwanted variations that makes accurate biological interpretations difficult. The scMerge method leverages factor analysis, stably expressed genes (SEGs) and (pseudo-) replicates to remove unwanted variations and merge multiple scRNA-Seq data. This package contains all the necessary functions in the scMerge pipeline, including the identification of SEGs, replication-identification methods, and merging of scRNA-Seq data.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/scMerge.html

License

GPL-3

Recipe

/bioconductor-scmerge/meta.yaml

package bioconductor-scmerge

(downloads) docker_bioconductor-scmerge

Versions

1.0.0-1

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-scmerge

and update with:

conda update bioconductor-scmerge

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-scmerge:<tag>

(see bioconductor-scmerge/tags for valid values for <tag>)