recipe bioconductor-scmeth

Functions to conduct quality control analysis in methylation data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/scmeth.html

License:

GPL-2

Recipe:

/bioconductor-scmeth/meta.yaml

Functions to analyze methylation data can be found here. Some functions are relevant for single cell methylation data but most other functions can be used for any methylation data. Highlight of this workflow is the comprehensive quality control report.

package bioconductor-scmeth

Versions:

1.18.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.10.0-0,  1.8.0-0,  1.6.0-0,  1.4.0-1,  1.2.1-0

Depends:

• bioconductor-annotationhub >=3.6.0,<3.7.0

• bioconductor-annotatr >=1.24.0,<1.25.0

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-bsgenome >=1.66.0,<1.67.0

• bioconductor-bsseq >=1.34.0,<1.35.0

• bioconductor-delayedarray >=0.24.0,<0.25.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-hdf5array >=1.26.0,<1.27.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• r-base >=4.2,<4.3.0a0

• r-dt

• r-knitr

• r-reshape2

• r-rmarkdown

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-scmeth

and update with:

conda update bioconductor-scmeth

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-scmeth:<tag>

(see bioconductor-scmeth/tags for valid values for <tag>)

Download stats

Link to this page

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