- recipe bioconductor-scmeth
Functions to conduct quality control analysis in methylation data
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/scmeth.html
- License
GPL-2
- Recipe
Functions to analyze methylation data can be found here. Some functions are relevant for single cell methylation data but most other functions can be used for any methylation data. Highlight of this workflow is the comprehensive quality control report.
- package bioconductor-scmeth¶
-
- Versions
1.14.0-0
,1.12.0-0
,1.10.0-1
,1.10.0-0
,1.8.0-0
,1.6.0-0
,1.4.0-1
,1.2.1-0
- Depends
bioconductor-annotationhub
>=3.2.0,<3.3.0
bioconductor-annotatr
>=1.20.0,<1.21.0
bioconductor-biostrings
>=2.62.0,<2.63.0
bioconductor-bsgenome
>=1.62.0,<1.63.0
bioconductor-bsseq
>=1.30.0,<1.31.0
bioconductor-delayedarray
>=0.20.0,<0.21.0
bioconductor-genomeinfodb
>=1.30.0,<1.31.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-hdf5array
>=1.22.0,<1.23.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-scmeth
and update with:
conda update bioconductor-scmeth
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-scmeth:<tag>
(see bioconductor-scmeth/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-scmeth/README.html)