Package Recipe 'bioconductor-scmeth'

recipe bioconductor-scmeth¶

Functions to analyze methylation data can be found here. Some functions are relevant for single cell methylation data but most other functions can be used for any methylation data. Highlight of this workflow is the comprehensive quality control report.

Homepage: https://bioconductor.org/packages/3.9/bioc/html/scmeth.html
License: GPL-2
Recipe: /bioconductor-scmeth/meta.yaml

package bioconductor-scmeth¶

Versions: 1.2.1-0
Depends bioconductor-annotationhub: >=2.14.0,<2.15.0
Depends bioconductor-annotatr: >=1.8.0,<1.9.0
Depends bioconductor-biostrings: >=2.50.0,<2.51.0
Depends bioconductor-bsgenome: >=1.50.0,<1.51.0
Depends bioconductor-bsseq: >=1.18.0,<1.19.0
Depends bioconductor-delayedarray: >=0.8.0,<0.9.0
Depends bioconductor-genomeinfodb: >=1.18.0,<1.19.0
Depends bioconductor-genomicranges: >=1.34.0,<1.35.0
Depends bioconductor-hdf5array: >=1.10.0,<1.11.0
Depends bioconductor-summarizedexperiment: >=1.12.0,<1.13.0
Depends r-base: >=3.5.1,<3.5.2.0a0
Depends r-dt
Depends r-knitr
Depends r-reshape2
Depends r-rmarkdown
Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-scmeth

and update with:

conda update bioconductor-scmeth

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-scmeth:<tag>

(see bioconductor-scmeth/tags for valid values for <tag>)

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-scmeth/README.html)