- recipe bioconductor-sconify
A toolkit for performing KNN-based statistics for flow and mass cytometry data
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/Sconify.html
- License:
Artistic-2.0
- Recipe:
This package does k-nearest neighbor based statistics and visualizations with flow and mass cytometery data. This gives tSNE maps"fold change" functionality and provides a data quality metric by assessing manifold overlap between fcs files expected to be the same. Other applications using this package include imputation, marker redundancy, and testing the relative information loss of lower dimension embeddings compared to the original manifold.
- package bioconductor-sconify¶
-
- Versions:
1.18.0-0
,1.14.0-0
,1.12.0-0
,1.10.0-1
,1.10.0-0
,1.8.0-0
,1.6.0-0
,1.4.0-1
,1.2.0-0
- Depends:
bioconductor-flowcore
>=2.10.0,<2.11.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-sconify
and update with:
conda update bioconductor-sconify
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-sconify:<tag>
(see bioconductor-sconify/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-sconify/README.html)