recipe bioconductor-scoreinvhap

scoreInvHap can get the samples’ inversion status of known inversions. scoreInvHap uses SNP data as input and requires the following information about the inversion: genotype frequencies in the different haplotypes, R2 between the region SNPs and inversion status and heterozygote genotypes in the reference. The package include this data for two well known inversions (8p23 and 17q21.31) and for two additional regions.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/scoreInvHap.html

License

file LICENSE

Recipe

/bioconductor-scoreinvhap/meta.yaml

package bioconductor-scoreinvhap

Versions

1.4.0-0

Depends

• bioconductor-biocparallel >=1.16.0,<1.17.0

• bioconductor-biostrings >=2.50.0,<2.51.0

• bioconductor-genomicranges >=1.34.0,<1.35.0

• bioconductor-snpstats >=1.32.0,<1.33.0

• bioconductor-summarizedexperiment >=1.12.0,<1.13.0

• bioconductor-variantannotation >=1.28.0,<1.29.0

• r-base >=3.5.1,<3.5.2.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-scoreinvhap

and update with:

conda update bioconductor-scoreinvhap

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-scoreinvhap:<tag>

(see bioconductor-scoreinvhap/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-scoreinvhap/README.html)