-
recipe
bioconductor-scoreinvhap
Get inversion status in predefined regions
- Homepage
https://bioconductor.org/packages/3.12/bioc/html/scoreInvHap.html
- License
file LICENSE
- Recipe
scoreInvHap can get the samples' inversion status of known inversions. scoreInvHap uses SNP data as input and requires the following information about the inversion: genotype frequencies in the different haplotypes, R2 between the region SNPs and inversion status and heterozygote genotypes in the reference. The package include this data for 21 inversions.
-
package
bioconductor-scoreinvhap
¶ -
- Versions
1.12.0-0
,1.10.0-0
,1.8.0-0
,1.6.0-1
,1.4.0-0
- Depends
bioconductor-biocparallel
>=1.24.0,<1.25.0
bioconductor-biostrings
>=2.58.0,<2.59.0
bioconductor-genomicranges
>=1.42.0,<1.43.0
bioconductor-snpstats
>=1.40.0,<1.41.0
bioconductor-summarizedexperiment
>=1.20.0,<1.21.0
bioconductor-variantannotation
>=1.36.0,<1.37.0
r-base
>=4.0,<4.1.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-scoreinvhap
and update with:
conda update bioconductor-scoreinvhap
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-scoreinvhap:<tag>
(see bioconductor-scoreinvhap/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-scoreinvhap/README.html)