recipe bioconductor-scoreinvhap

Get inversion status in predefined regions

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/scoreInvHap.html

License:

file LICENSE

Recipe:

/bioconductor-scoreinvhap/meta.yaml

scoreInvHap can get the samples' inversion status of known inversions. scoreInvHap uses SNP data as input and requires the following information about the inversion: genotype frequencies in the different haplotypes, R2 between the region SNPs and inversion status and heterozygote genotypes in the reference. The package include this data for 21 inversions.

package bioconductor-scoreinvhap

Versions:

1.20.0-0,  1.16.0-0,  1.14.0-0,  1.12.1-0,  1.12.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.4.0-0

Depends:

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-snpstats >=1.48.0,<1.49.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• bioconductor-variantannotation >=1.44.0,<1.45.0

• r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-scoreinvhap

and update with:

conda update bioconductor-scoreinvhap

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-scoreinvhap:<tag>

(see bioconductor-scoreinvhap/tags for valid values for <tag>)

Download stats

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