recipe bioconductor-scp

Mass Spectrometry-Based Single-Cell Proteomics Data Analysis

Homepage

https://bioconductor.org/packages/3.14/bioc/html/scp.html

License

Artistic-2.0

Recipe

/bioconductor-scp/meta.yaml

Utility functions for manipulating, processing, and analyzing mass spectrometry-based single-cell proteomics (SCP) data. The package is an extension to the 'QFeatures' package designed for SCP applications.

package bioconductor-scp

Versions

1.4.0-0,  1.2.0-0,  1.0.0-1,  1.0.0-0

Depends

• bioconductor-mscoreutils >=1.6.0,<1.7.0

• bioconductor-multiassayexperiment >=1.20.0,<1.21.0

• bioconductor-qfeatures >=1.4.0,<1.5.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• bioconductor-singlecellexperiment >=1.16.0,<1.17.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• r-base >=4.1,<4.2.0a0

• r-dplyr

• r-magrittr

• r-matrixstats

• r-rlang

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-scp

and update with:

conda update bioconductor-scp

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-scp:<tag>

(see bioconductor-scp/tags for valid values for <tag>)

Download stats

Link to this page

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