recipe bioconductor-scpipe

A preprocessing pipeline for single cell RNA-seq data that starts from the fastq files and produces a gene count matrix with associated quality control information. It can process fastq data generated by CEL-seq, MARS-seq, Drop-seq, Chromium 10x and SMART-seq protocols.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/scPipe.html

License

GPL (>= 2)

Recipe

/bioconductor-scpipe/meta.yaml

package bioconductor-scpipe

(downloads) docker_bioconductor-scpipe

Versions

1.6.0-1, 1.4.1-0, 1.4.0-0, 1.2.1-0, 1.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-scpipe

and update with:

conda update bioconductor-scpipe

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-scpipe:<tag>

(see bioconductor-scpipe/tags for valid values for <tag>)