recipe bioconductor-scran

Methods for Single-Cell RNA-Seq Data Analysis

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/scran.html

License:

GPL-3

Recipe:

/bioconductor-scran/meta.yaml

Links:

biotools: scran

Implements miscellaneous functions for interpretation of single-cell RNA-seq data. Methods are provided for assignment of cell cycle phase, detection of highly variable and significantly correlated genes, identification of marker genes, and other common tasks in routine single-cell analysis workflows.

package bioconductor-scran

Versions:

1.26.0-0,  1.22.1-1,  1.22.1-0,  1.22.0-0,  1.20.1-0,  1.18.5-0,  1.18.0-0,  1.16.0-0,  1.14.1-0, 

1.26.0-0,  1.22.1-1,  1.22.1-0,  1.22.0-0,  1.20.1-0,  1.18.5-0,  1.18.0-0,  1.16.0-0,  1.14.1-0,  1.14.0-0,  1.12.1-0,  1.10.1-0,  1.8.4-0,  1.6.2-0,  1.4.5-0

Depends:

• bioconductor-beachmat >=2.14.0,<2.15.0

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-biocsingular >=1.14.0,<1.15.0

• bioconductor-bluster >=1.8.0,<1.9.0

• bioconductor-delayedarray >=0.24.0,<0.25.0

• bioconductor-delayedmatrixstats >=1.20.0,<1.21.0

• bioconductor-edger >=3.40.0,<3.41.0

• bioconductor-limma >=3.54.0,<3.55.0

• bioconductor-metapod >=1.6.0,<1.7.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-scuttle >=1.8.0,<1.9.0

• bioconductor-singlecellexperiment >=1.20.0,<1.21.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• libstdcxx-ng >=12

• r-base >=4.2,<4.3.0a0

• r-bh

• r-dqrng

• r-igraph

• r-matrix

• r-rcpp

• r-statmod

Required By:

• bioconductor-citefuse

• bioconductor-singlecellsignalr

• bioconductor-mumosa

• bioconductor-pipecomp

• bioconductor-singlecelltk

• bioconductor-conclus

• bioconductor-bayesspace

• bioconductor-scdblfinder

• bioconductor-chromscape

• bioconductor-basics

• scran-cli

• bioconductor-basicstan

• bioconductor-spatialheatmap

• bioconductor-dino

• bioconductor-msimpute

• bioconductor-spaniel

• r-bayesprism

• bioconductor-scdd

• bioconductor-biotip

• bioconductor-irisfgm

• r-cellassign

• bioconductor-flames

• bioconductor-sctreeviz

• bioconductor-celda

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-scran

and update with:

conda update bioconductor-scran

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-scran:<tag>

(see bioconductor-scran/tags for valid values for <tag>)

Download stats

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