- recipe bioconductor-scran
Methods for Single-Cell RNA-Seq Data Analysis
- Homepage:
- License:
GPL-3
- Recipe:
- Links:
biotools: scran
Implements miscellaneous functions for interpretation of single-cell RNA-seq data. Methods are provided for assignment of cell cycle phase, detection of highly variable and significantly correlated genes, identification of marker genes, and other common tasks in routine single-cell analysis workflows.
- package bioconductor-scran¶
-
- Versions:
1.26.0-0
,1.22.1-1
,1.22.1-0
,1.22.0-0
,1.20.1-0
,1.18.5-0
,1.18.0-0
,1.16.0-0
,1.14.1-0
,1.26.0-0
,1.22.1-1
,1.22.1-0
,1.22.0-0
,1.20.1-0
,1.18.5-0
,1.18.0-0
,1.16.0-0
,1.14.1-0
,1.14.0-0
,1.12.1-0
,1.10.1-0
,1.8.4-0
,1.6.2-0
,1.4.5-0
- Depends:
bioconductor-beachmat
>=2.14.0,<2.15.0
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-biocparallel
>=1.32.0,<1.33.0
bioconductor-biocsingular
>=1.14.0,<1.15.0
bioconductor-bluster
>=1.8.0,<1.9.0
bioconductor-delayedarray
>=0.24.0,<0.25.0
bioconductor-delayedmatrixstats
>=1.20.0,<1.21.0
bioconductor-edger
>=3.40.0,<3.41.0
bioconductor-limma
>=3.54.0,<3.55.0
bioconductor-metapod
>=1.6.0,<1.7.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-scuttle
>=1.8.0,<1.9.0
bioconductor-singlecellexperiment
>=1.20.0,<1.21.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
libblas
>=3.9.0,<4.0a0
libgcc-ng
>=12
liblapack
>=3.9.0,<4.0a0
libstdcxx-ng
>=12
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-scran
and update with:
conda update bioconductor-scran
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-scran:<tag>
(see bioconductor-scran/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-scran/README.html)