- recipe bioconductor-screclassify
scReClassify: post hoc cell type classification of single-cell RNA-seq data
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/scReClassify.html
- License:
GPL-3 + file LICENSE
- Recipe:
A post hoc cell type classification tool to fine-tune cell type annotations generated by any cell type classification procedure with semi-supervised learning algorithm AdaSampling technique. The current version of scReClassify supports Support Vector Machine and Random Forest as a base classifier.
- package bioconductor-screclassify¶
-
- Versions:
1.4.0-0
,1.0.0-0
- Depends:
bioconductor-singlecellexperiment
>=1.20.0,<1.21.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-screclassify
and update with:
conda update bioconductor-screclassify
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-screclassify:<tag>
(see bioconductor-screclassify/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-screclassify/README.html)