recipe bioconductor-screclassify

scReClassify: post hoc cell type classification of single-cell RNA-seq data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/scReClassify.html

License:

GPL-3 + file LICENSE

Recipe:

/bioconductor-screclassify/meta.yaml

A post hoc cell type classification tool to fine-tune cell type annotations generated by any cell type classification procedure with semi-supervised learning algorithm AdaSampling technique. The current version of scReClassify supports Support Vector Machine and Random Forest as a base classifier.

package bioconductor-screclassify

Versions:

1.4.0-0,  1.0.0-0

Depends:

• bioconductor-singlecellexperiment >=1.20.0,<1.21.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• r-base >=4.2,<4.3.0a0

• r-e1071

• r-randomforest

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-screclassify

and update with:

conda update bioconductor-screclassify

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-screclassify:<tag>

(see bioconductor-screclassify/tags for valid values for <tag>)

Download stats

Link to this page

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