- recipe bioconductor-screpertoire
A toolkit for single-cell immune receptor profiling
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/scRepertoire.html
- License:
GPL-2
- Recipe:
scRepertoire was built to process data derived from the 10x Genomics Chromium Immune Profiling for both T-cell receptor (TCR) and immunoglobulin (Ig) enrichment workflows and subsequently interacts with the popular Seurat and SingleCellExperiment R packages. It also allows for general analysis of single-cell clonotype information without the use of expression information. The package functions as a wrapper for Startrac and powerTCR R packages.
- package bioconductor-screpertoire¶
-
- Versions:
1.8.0-0
,1.4.0-0
,1.2.0-0
,1.0.0-1
,1.0.0-0
- Depends:
bioconductor-powertcr
>=1.18.0,<1.19.0
bioconductor-singlecellexperiment
>=1.20.0,<1.21.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-screpertoire
and update with:
conda update bioconductor-screpertoire
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-screpertoire:<tag>
(see bioconductor-screpertoire/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-screpertoire/README.html)