recipe bioconductor-screpertoire

A toolkit for single-cell immune receptor profiling

Homepage

https://bioconductor.org/packages/3.13/bioc/html/scRepertoire.html

License

Apache License 2.0

Recipe

/bioconductor-screpertoire/meta.yaml

scRepertoire was built to process data derived from the 10x Genomics Chromium Immune Profiling for both T-cell receptor (TCR) and immunoglobulin (Ig) enrichment workflows and subsequently interacts with the popular Seurat and SingleCellExperiment R packages. It also allows for general analysis of single-cell clonotype information without the use of expression information. The package functions as a wrapper for Startrac and powerTCR R packages.

package bioconductor-screpertoire

(downloads) docker_bioconductor-screpertoire

Versions

1.2.0-01.0.0-11.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-screpertoire

and update with:

conda update bioconductor-screpertoire

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-screpertoire:<tag>

(see bioconductor-screpertoire/tags for valid values for <tag>)

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