- recipe bioconductor-sctgif
Cell type annotation for unannotated single-cell RNA-Seq data
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/scTGIF.html
- License
Artistic-2.0
- Recipe
scTGIF connects the cells and the related gene functions without cell type label.
- package bioconductor-sctgif¶
-
- Versions
1.8.0-1
,1.8.0-0
,1.6.0-0
,1.4.0-1
,1.4.0-0
,1.2.0-0
,1.0.0-0
- Depends
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-biocstyle
>=2.22.0,<2.23.0
bioconductor-gseabase
>=1.56.0,<1.57.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-schex
>=1.8.0,<1.9.0
bioconductor-singlecellexperiment
>=1.16.0,<1.17.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
libblas
>=3.8.0,<4.0a0
libgcc-ng
>=10.3.0
liblapack
>=3.8.0,<4.0a0
libstdcxx-ng
>=10.3.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-sctgif
and update with:
conda update bioconductor-sctgif
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-sctgif:<tag>
(see bioconductor-sctgif/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-sctgif/README.html)