recipe bioconductor-sctreeviz

R/Bioconductor package to interactively explore and visualize single cell RNA-seq datasets with hierarhical annotations

Homepage

https://bioconductor.org/packages/3.14/bioc/html/scTreeViz.html

License

Artistic-2.0

Recipe

/bioconductor-sctreeviz/meta.yaml

scTreeViz provides classes to support interactive data aggregation and visualization of single cell RNA-seq datasets with hierarchies for e.g. cell clusters at different resolutions. The `TreeIndex` class provides methods to manage hierarchy and split the tree at a given resolution or across resolutions. The `TreeViz` class extends `SummarizedExperiment` and can performs quick aggregations on the count matrix defined by clusters.

package bioconductor-sctreeviz

(downloads) docker_bioconductor-sctreeviz

Versions

1.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-sctreeviz

and update with:

conda update bioconductor-sctreeviz

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-sctreeviz:<tag>

(see bioconductor-sctreeviz/tags for valid values for <tag>)

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