- recipe bioconductor-selectksigs
Selecting the number of mutational signatures using a perplexity-based measure and cross-validation
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/selectKSigs.html
- License:
GPL-3
- Recipe:
A package to suggest the number of mutational signatures in a collection of somatic mutations using calculating the cross-validated perplexity score.
- package bioconductor-selectksigs¶
-
- Versions:
1.10.0-1
,1.10.0-0
,1.6.0-2
,1.6.0-1
,1.6.0-0
,1.4.0-0
,1.2.0-1
,1.2.0-0
,1.0.0-0
- Depends:
bioconductor-hilda
>=1.12.0,<1.13.0
libblas
>=3.9.0,<4.0a0
libgcc-ng
>=12
liblapack
>=3.9.0,<4.0a0
libstdcxx-ng
>=12
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-selectksigs
and update with:
conda update bioconductor-selectksigs
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-selectksigs:<tag>
(see bioconductor-selectksigs/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-selectksigs/README.html)