recipe bioconductor-selectksigs

Selecting the number of mutational signatures using a perplexity-based measure and cross-validation

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/selectKSigs.html

License:

GPL-3

Recipe:

/bioconductor-selectksigs/meta.yaml

A package to suggest the number of mutational signatures in a collection of somatic mutations using calculating the cross-validated perplexity score.

package bioconductor-selectksigs

Versions:

1.10.0-1,  1.10.0-0,  1.6.0-2,  1.6.0-1,  1.6.0-0,  1.4.0-0,  1.2.0-1,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-hilda >=1.12.0,<1.13.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• libstdcxx-ng >=12

• r-base >=4.2,<4.3.0a0

• r-gtools

• r-magrittr

• r-rcpp

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-selectksigs

and update with:

conda update bioconductor-selectksigs

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-selectksigs:<tag>

(see bioconductor-selectksigs/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-selectksigs/README.html)