- recipe bioconductor-semdist
Information Accretion-based Function Predictor Evaluation
- Homepage:
https://bioconductor.org/packages/3.14/bioc/html/SemDist.html
- License:
GPL (>= 2)
- Recipe:
- Links:
biotools: semdist, doi: 10.1038/nmeth.3252
This package implements methods to calculate information accretion for a given version of the gene ontology and uses this data to calculate remaining uncertainty, misinformation, and semantic similarity for given sets of predicted annotations and true annotations from a protein function predictor.
- package bioconductor-semdist¶
-
- Versions:
1.28.0-0
,1.26.0-0
,1.24.0-1
,1.24.0-0
,1.22.0-0
,1.20.0-0
,1.18.0-1
,1.16.0-1
,1.16.0-0
,1.28.0-0
,1.26.0-0
,1.24.0-1
,1.24.0-0
,1.22.0-0
,1.20.0-0
,1.18.0-1
,1.16.0-1
,1.16.0-0
,1.14.0-0
,1.12.0-0
,1.10.0-0
- Depends:
bioconductor-annotate
>=1.72.0,<1.73.0
bioconductor-annotationdbi
>=1.56.0,<1.57.0
bioconductor-go.db
>=3.14.0,<3.15.0
r-base
>=4.1,<4.2.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-semdist
and update with:
conda update bioconductor-semdist
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-semdist:<tag>
(see bioconductor-semdist/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-semdist/README.html)