recipe bioconductor-semdist

Information Accretion-based Function Predictor Evaluation

Homepage

https://bioconductor.org/packages/3.11/bioc/html/SemDist.html

License

GPL (>= 2)

Recipe

/bioconductor-semdist/meta.yaml

Links

biotools: semdist, doi: 10.1038/nmeth.3252

This package implements methods to calculate information accretion for a given version of the gene ontology and uses this data to calculate remaining uncertainty, misinformation, and semantic similarity for given sets of predicted annotations and true annotations from a protein function predictor.

package bioconductor-semdist

Versions

1.22.0-0,  1.20.0-0,  1.18.0-1,  1.16.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-0

Depends

• bioconductor-annotate >=1.66.0,<1.67.0

• bioconductor-annotationdbi >=1.50.0,<1.51.0

• bioconductor-go.db >=3.11.0,<3.12.0

• r-base >=4.0,<4.1.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-semdist

and update with:

conda update bioconductor-semdist

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-semdist:<tag>

(see bioconductor-semdist/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-semdist/README.html)