- recipe bioconductor-seqarray
Data management of large-scale whole-genome sequence variant calls
- Homepage:
https://bioconductor.org/packages/3.14/bioc/html/SeqArray.html
- License:
GPL-3
- Recipe:
Data management of large-scale whole-genome sequencing variant calls with thousands of individuals: genotypic data (e.g., SNVs, indels and structural variation calls) and annotations in SeqArray GDS files are stored in an array-oriented and compressed manner, with efficient data access using the R programming language.
- package bioconductor-seqarray¶
-
- Versions:
1.34.0-1
,1.34.0-0
,1.32.0-0
,1.30.0-1
,1.30.0-0
,1.28.0-0
,1.26.0-0
,1.24.2-0
,1.22.2-0
- Depends:
bioconductor-biostrings
>=2.62.0,<2.63.0
bioconductor-gdsfmt
>=1.30.0,<1.31.0
bioconductor-genomeinfodb
>=1.30.0,<1.31.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
libblas
>=3.8.0,<4.0a0
libgcc-ng
>=10.3.0
liblapack
>=3.8.0,<4.0a0
libstdcxx-ng
>=10.3.0
r-base
>=4.1,<4.2.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-seqarray
and update with:
conda update bioconductor-seqarray
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-seqarray:<tag>
(see bioconductor-seqarray/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-seqarray/README.html)