recipe bioconductor-seqbias

Estimation of per-position bias in high-throughput sequencing data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/seqbias.html

License:

LGPL-3

Recipe:

/bioconductor-seqbias/meta.yaml

This package implements a model of per-position sequencing bias in high-throughput sequencing data using a simple Bayesian network, the structure and parameters of which are trained on a set of aligned reads and a reference genome sequence.

package bioconductor-seqbias

Versions:

1.46.0-0,  1.42.0-2,  1.42.0-1,  1.42.0-0,  1.40.0-0,  1.38.0-1,  1.38.0-0,  1.36.0-0,  1.34.0-0, 

1.46.0-0,  1.42.0-2,  1.42.0-1,  1.42.0-0,  1.40.0-0,  1.38.0-1,  1.38.0-0,  1.36.0-0,  1.34.0-0,  1.32.0-1,  1.30.0-0

Depends:

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-rhtslib >=2.0.0,<2.1.0

• bioconductor-zlibbioc >=1.44.0,<1.45.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• libstdcxx-ng >=12

• r-base >=4.2,<4.3.0a0

Required By:

• bioconductor-reqon

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-seqbias

and update with:

conda update bioconductor-seqbias

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-seqbias:<tag>

(see bioconductor-seqbias/tags for valid values for <tag>)

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