- recipe bioconductor-seqbias
Estimation of per-position bias in high-throughput sequencing data
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/seqbias.html
- License:
LGPL-3
- Recipe:
This package implements a model of per-position sequencing bias in high-throughput sequencing data using a simple Bayesian network, the structure and parameters of which are trained on a set of aligned reads and a reference genome sequence.
- package bioconductor-seqbias¶
-
- Versions:
1.46.0-0
,1.42.0-2
,1.42.0-1
,1.42.0-0
,1.40.0-0
,1.38.0-1
,1.38.0-0
,1.36.0-0
,1.34.0-0
,1.46.0-0
,1.42.0-2
,1.42.0-1
,1.42.0-0
,1.40.0-0
,1.38.0-1
,1.38.0-0
,1.36.0-0
,1.34.0-0
,1.32.0-1
,1.30.0-0
- Depends:
bioconductor-biostrings
>=2.66.0,<2.67.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-rhtslib
>=2.0.0,<2.1.0
bioconductor-zlibbioc
>=1.44.0,<1.45.0
libblas
>=3.9.0,<4.0a0
libgcc-ng
>=12
liblapack
>=3.9.0,<4.0a0
libstdcxx-ng
>=12
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-seqbias
and update with:
conda update bioconductor-seqbias
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-seqbias:<tag>
(see bioconductor-seqbias/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-seqbias/README.html)