recipe bioconductor-seqc

RNA-seq data generated from SEQC (MAQC-III) study

Homepage

https://bioconductor.org/packages/3.14/data/experiment/html/seqc.html

License

GPL-3

Recipe

/bioconductor-seqc/meta.yaml

The SEQC/MAQC-III Consortium has produced benchmark RNA-seq data for the assessment of RNA sequencing technologies and data analysis methods (Nat Biotechnol, 2014). Billions of sequence reads have been generated from ten different sequencing sites. This package contains the summarized read count data for ~2000 sequencing libraries. It also includes all the exon-exon junctions discovered from the study. TaqMan RT-PCR data for ~1000 genes and ERCC spike-in sequence data are included in this package as well.

package bioconductor-seqc

(downloads) docker_bioconductor-seqc

Versions

1.28.0-01.26.0-01.24.0-11.24.0-01.22.0-01.20.0-01.18.0-11.16.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-seqc

and update with:

conda update bioconductor-seqc

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-seqc:<tag>

(see bioconductor-seqc/tags for valid values for <tag>)

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