- recipe bioconductor-seqcat
High Throughput Sequencing Cell Authentication Toolkit
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/seqCAT.html
- License:
MIT + file LICENCE
- Recipe:
The seqCAT package uses variant calling data (in the form of VCF files) from high throughput sequencing technologies to authenticate and validate the source, function and characteristics of biological samples used in scientific endeavours.
- package bioconductor-seqcat¶
-
- Versions:
1.20.0-0
,1.16.1-0
,1.16.0-0
,1.14.0-0
,1.12.0-1
,1.12.0-0
,1.10.0-0
,1.8.0-0
,1.6.3-0
,1.20.0-0
,1.16.1-0
,1.16.0-0
,1.14.0-0
,1.12.0-1
,1.12.0-0
,1.10.0-0
,1.8.0-0
,1.6.3-0
,1.6.0-1
,1.4.1-0
,1.4.0-0
- Depends:
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-rtracklayer
>=1.58.0,<1.59.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
bioconductor-variantannotation
>=1.44.0,<1.45.0
r-base
>=4.2,<4.3.0a0
r-dplyr
>=0.5.0
r-ggplot2
>=2.2.1
r-scales
>=0.4.1
r-tidyr
>=0.6.1
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-seqcat
and update with:
conda update bioconductor-seqcat
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-seqcat:<tag>
(see bioconductor-seqcat/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-seqcat/README.html)