recipe bioconductor-seqcat

High Throughput Sequencing Cell Authentication Toolkit

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/seqCAT.html

License:

MIT + file LICENCE

Recipe:

/bioconductor-seqcat/meta.yaml

The seqCAT package uses variant calling data (in the form of VCF files) from high throughput sequencing technologies to authenticate and validate the source, function and characteristics of biological samples used in scientific endeavours.

package bioconductor-seqcat

Versions:

1.20.0-0,  1.16.1-0,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.12.0-0,  1.10.0-0,  1.8.0-0,  1.6.3-0, 

1.20.0-0,  1.16.1-0,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.12.0-0,  1.10.0-0,  1.8.0-0,  1.6.3-0,  1.6.0-1,  1.4.1-0,  1.4.0-0

Depends:

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-rtracklayer >=1.58.0,<1.59.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• bioconductor-variantannotation >=1.44.0,<1.45.0

• r-base >=4.2,<4.3.0a0

• r-dplyr >=0.5.0

• r-ggplot2 >=2.2.1

• r-rlang

• r-scales >=0.4.1

• r-tidyr >=0.6.1

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-seqcat

and update with:

conda update bioconductor-seqcat

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-seqcat:<tag>

(see bioconductor-seqcat/tags for valid values for <tag>)

Download stats

Link to this page

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