recipe bioconductor-seqgate

Filtering of Lowly Expressed Features

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/SeqGate.html

License:

GPL (>= 2.0)

Recipe:

/bioconductor-seqgate/meta.yaml

Filtering of lowly expressed features (e.g. genes) is a common step before performing statistical analysis, but an arbitrary threshold is generally chosen. SeqGate implements a method that rationalize this step by the analysis of the distibution of counts in replicate samples. The gate is the threshold above which sequenced features can be considered as confidently quantified.

package bioconductor-seqgate

Versions:

1.8.0-0,  1.4.0-0,  1.2.0-0,  1.0.1-0,  1.0.0-0

Depends:

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• r-base >=4.2,<4.3.0a0

• r-biocmanager

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-seqgate

and update with:

conda update bioconductor-seqgate

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-seqgate:<tag>

(see bioconductor-seqgate/tags for valid values for <tag>)

Download stats

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