- recipe bioconductor-seqgate
Filtering of Lowly Expressed Features
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/SeqGate.html
- License:
GPL (>= 2.0)
- Recipe:
Filtering of lowly expressed features (e.g. genes) is a common step before performing statistical analysis, but an arbitrary threshold is generally chosen. SeqGate implements a method that rationalize this step by the analysis of the distibution of counts in replicate samples. The gate is the threshold above which sequenced features can be considered as confidently quantified.
- package bioconductor-seqgate¶
-
- Versions:
1.8.0-0
,1.4.0-0
,1.2.0-0
,1.0.1-0
,1.0.0-0
- Depends:
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-seqgate
and update with:
conda update bioconductor-seqgate
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-seqgate:<tag>
(see bioconductor-seqgate/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-seqgate/README.html)