- recipe bioconductor-seqpattern
Visualising oligonucleotide patterns and motif occurrences across a set of sorted sequences
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/seqPattern.html
- License:
GPL-3
- Recipe:
- Links:
biotools: seqpattern, doi: 10.1038/nmeth.3252
Visualising oligonucleotide patterns and sequence motifs occurrences across a large set of sequences centred at a common reference point and sorted by a user defined feature.
- package bioconductor-seqpattern¶
-
- Versions:
1.30.0-0
,1.26.0-0
,1.24.0-0
,1.22.0-1
,1.22.0-0
,1.20.0-0
,1.18.0-0
,1.16.0-1
,1.14.0-0
,1.30.0-0
,1.26.0-0
,1.24.0-0
,1.22.0-1
,1.22.0-0
,1.20.0-0
,1.18.0-0
,1.16.0-1
,1.14.0-0
,1.12.0-0
,1.10.0-0
,1.8.0-0
,1.6.0-0
,1.4.0-0
,1.2.0-1
,1.2.0-0
- Depends:
bioconductor-biostrings
>=2.66.0,<2.67.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-seqpattern
and update with:
conda update bioconductor-seqpattern
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-seqpattern:<tag>
(see bioconductor-seqpattern/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-seqpattern/README.html)