recipe bioconductor-seqpattern

Visualising oligonucleotide patterns and motif occurrences across a set of sorted sequences

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/seqPattern.html

License:

GPL-3

Recipe:

/bioconductor-seqpattern/meta.yaml

Links:

biotools: seqpattern, doi: 10.1038/nmeth.3252

Visualising oligonucleotide patterns and sequence motifs occurrences across a large set of sequences centred at a common reference point and sorted by a user defined feature.

package bioconductor-seqpattern

Versions:

1.30.0-0,  1.26.0-0,  1.24.0-0,  1.22.0-1,  1.22.0-0,  1.20.0-0,  1.18.0-0,  1.16.0-1,  1.14.0-0, 

1.30.0-0,  1.26.0-0,  1.24.0-0,  1.22.0-1,  1.22.0-0,  1.20.0-0,  1.18.0-0,  1.16.0-1,  1.14.0-0,  1.12.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-0,  1.4.0-0,  1.2.0-1,  1.2.0-0

Depends:

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• r-base >=4.2,<4.3.0a0

• r-kernsmooth

• r-plotrix

Required By:

• bioconductor-genomation

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-seqpattern

and update with:

conda update bioconductor-seqpattern

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-seqpattern:<tag>

(see bioconductor-seqpattern/tags for valid values for <tag>)

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