recipe bioconductor-seqsetvis

seqsetvis enables the visualization and analysis of multiple genomic samples. Although seqsetvis was designed for the comparison of mulitple ChIP-seq samples, this package is domain-agnostic and allows the processing of multiple genomic coordinate files (bed-like files) and signal files (bigwig files or bam pileups).

Homepage

https://bioconductor.org/packages/3.9/bioc/html/seqsetvis.html

License

MIT + file LICENSE

Recipe

/bioconductor-seqsetvis/meta.yaml

package bioconductor-seqsetvis

Versions

1.4.0-1, 1.2.0-0

Depends

• bioconductor-genomeinfodb >=1.20.0,<1.21.0

• bioconductor-genomicalignments >=1.20.0,<1.21.0

• bioconductor-genomicranges >=1.36.0,<1.37.0

• bioconductor-iranges >=2.18.0,<2.19.0

• bioconductor-limma >=3.40.0,<3.41.0

• bioconductor-rsamtools >=2.0.0,<2.1.0

• bioconductor-rtracklayer >=1.44.0,<1.45.0

• bioconductor-s4vectors >=0.22.0,<0.23.0

• r-base >=3.6,<3.7.0a0

• r-data.table

• r-eulerr

• r-ggplot2

• r-pbapply

• r-png

• r-rcolorbrewer

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-seqsetvis

and update with:

conda update bioconductor-seqsetvis

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-seqsetvis:<tag>

(see bioconductor-seqsetvis/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-seqsetvis/README.html)