- recipe bioconductor-seqsqc
A bioconductor package for sample quality check with next generation sequencing data
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/SeqSQC.html
- License:
GPL-3
- Recipe:
The SeqSQC is designed to identify problematic samples in NGS data, including samples with gender mismatch, contamination, cryptic relatedness, and population outlier.
- package bioconductor-seqsqc¶
-
- Versions:
1.20.0-0
,1.16.0-0
,1.14.0-0
,1.12.0-1
,1.12.0-0
,1.10.0-0
,1.8.0-0
,1.6.0-1
,1.4.0-0
- Depends:
bioconductor-experimenthub
>=2.6.0,<2.7.0
bioconductor-gdsfmt
>=1.34.0,<1.35.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-snprelate
>=1.32.0,<1.33.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-seqsqc
and update with:
conda update bioconductor-seqsqc
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-seqsqc:<tag>
(see bioconductor-seqsqc/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-seqsqc/README.html)