recipe bioconductor-seqtools

Analysis of nucleotide, sequence and quality content on fastq files

Homepage

https://bioconductor.org/packages/3.11/bioc/html/seqTools.html

License

Artistic-2.0

Recipe

/bioconductor-seqtools/meta.yaml

Links

biotools: seqtools, doi: 10.1038/nmeth.3252

Analyze read length, phred scores and alphabet frequency and DNA k-mers on uncompressed and compressed fastq files.

package bioconductor-seqtools

Versions

1.22.0-0, 1.20.0-0, 1.18.0-1, 1.18.0-0, 1.16.0-0, 1.14.0-0, 1.12.0-0, 1.10.0-0

Depends

• bioconductor-zlibbioc >=1.34.0,<1.35.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=7.3.0

• liblapack >=3.8.0,<3.9.0a0

• r-base >=4.0,<4.1.0a0

Required By

• bioconductor-qckitfastq

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-seqtools

and update with:

conda update bioconductor-seqtools

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-seqtools:<tag>

(see bioconductor-seqtools/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-seqtools/README.html)