- recipe bioconductor-seqtools
Analysis of nucleotide, sequence and quality content on fastq files
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/seqTools.html
- License
Artistic-2.0
- Recipe
- Links
biotools: seqtools, doi: 10.1038/nmeth.3252
Analyze read length, phred scores and alphabet frequency and DNA k-mers on uncompressed and compressed fastq files.
- package bioconductor-seqtools¶
-
- Versions
1.28.0-1
,1.28.0-0
,1.26.0-0
,1.24.0-1
,1.24.0-0
,1.22.0-0
,1.20.0-0
,1.18.0-1
,1.18.0-0
,1.28.0-1
,1.28.0-0
,1.26.0-0
,1.24.0-1
,1.24.0-0
,1.22.0-0
,1.20.0-0
,1.18.0-1
,1.18.0-0
,1.16.0-0
,1.14.0-0
,1.12.0-0
,1.10.0-0
- Depends
bioconductor-zlibbioc
>=1.40.0,<1.41.0
libblas
>=3.8.0,<4.0a0
libgcc-ng
>=10.3.0
liblapack
>=3.8.0,<4.0a0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-seqtools
and update with:
conda update bioconductor-seqtools
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-seqtools:<tag>
(see bioconductor-seqtools/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-seqtools/README.html)