- recipe bioconductor-shinyepico
ShinyÉPICo
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/shinyepico.html
- License:
AGPL-3 + file LICENSE
- Recipe:
ShinyÉPICo is a graphical pipeline to analyze Illumina DNA methylation arrays (450k or EPIC). It allows to calculate differentially methylated positions and differentially methylated regions in a user-friendly interface. Moreover, it includes several options to export the results and obtain files to perform downstream analysis.
- package bioconductor-shinyepico¶
-
- Versions:
1.6.0-0
,1.2.0-0
,1.0.0-0
- Depends:
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-limma
>=3.54.0,<3.55.0
bioconductor-minfi
>=1.44.0,<1.45.0
bioconductor-rtracklayer
>=1.58.0,<1.59.0
r-base
>=4.2,<4.3.0a0
r-data.table
>=1.13.0
r-doparallel
>=1.0.0
r-dplyr
>=1.0.9
r-dt
>=0.15.0
r-foreach
>=1.5.0
r-ggplot2
>=3.3.0
r-gplots
>=3.0.0
r-heatmaply
>=1.1.0
r-plotly
>=4.9.2
r-reshape2
>=1.4.0
r-rlang
>=1.0.2
r-rmarkdown
>=2.3.0
r-shiny
>=1.5.0
r-shinycssloaders
>=0.3.0
r-shinyjs
>=1.1.0
r-shinythemes
>=1.1.0
r-shinywidgets
>=0.5.0
r-statmod
>=1.4.0
r-tidyr
>=1.2.0
r-zip
>=2.1.0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-shinyepico
and update with:
conda update bioconductor-shinyepico
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-shinyepico:<tag>
(see bioconductor-shinyepico/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-shinyepico/README.html)