recipe bioconductor-shinyepico

ShinyÉPICo

Homepage

https://bioconductor.org/packages/3.14/bioc/html/shinyepico.html

License

AGPL-3 + file LICENSE

Recipe

/bioconductor-shinyepico/meta.yaml

ShinyÉPICo is a graphical pipeline to analyze Illumina DNA methylation arrays (450k or EPIC). It allows to calculate differentially methylated positions and differentially methylated regions in a user-friendly interface. Moreover, it includes several options to export the results and obtain files to perform downstream analysis.

package bioconductor-shinyepico

Versions

1.2.0-0,  1.0.0-0

Depends

• bioconductor-genomicranges >=1.46.0,<1.47.0

• bioconductor-limma >=3.50.0,<3.51.0

• bioconductor-minfi >=1.40.0,<1.41.0

• bioconductor-rtracklayer >=1.54.0,<1.55.0

• r-base >=4.1,<4.2.0a0

• r-data.table >=1.13.0

• r-doparallel >=1.0.0

• r-dplyr >=1.0.0

• r-dt >=0.15.0

• r-foreach >=1.5.0

• r-ggplot2 >=3.3.0

• r-gplots >=3.0.0

• r-heatmaply >=1.1.0

• r-plotly >=4.9.2

• r-reshape2 >=1.4.0

• r-rlang >=0.4.0

• r-rmarkdown >=2.3.0

• r-shiny >=1.5.0

• r-shinycssloaders >=0.3.0

• r-shinyjs >=1.1.0

• r-shinythemes >=1.1.0

• r-shinywidgets >=0.5.0

• r-statmod >=1.4.0

• r-tidyr >=1.1.0

• r-zip >=2.1.0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-shinyepico

and update with:

conda update bioconductor-shinyepico

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-shinyepico:<tag>

(see bioconductor-shinyepico/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-shinyepico/README.html)