recipe bioconductor-siggenes

Multiple Testing using SAM and Efron's Empirical Bayes Approaches

Homepage

https://bioconductor.org/packages/3.11/bioc/html/siggenes.html

License

LGPL (>= 2)

Recipe

/bioconductor-siggenes/meta.yaml

Links

biotools: siggenes, doi: 10.1186/1471-2105-9-144

Identification of differentially expressed genes and estimation of the False Discovery Rate (FDR) using both the Significance Analysis of Microarrays (SAM) and the Empirical Bayes Analyses of Microarrays (EBAM).

package bioconductor-siggenes

Versions

1.62.0-0,  1.60.0-0,  1.58.0-1,  1.56.0-0,  1.54.0-0,  1.52.0-0,  1.50.0-0,  1.46.0-0,  1.44.0-0

Depends

• bioconductor-biobase >=2.48.0,<2.49.0

• bioconductor-multtest >=2.44.0,<2.45.0

• r-base >=4.0,<4.1.0a0

• r-scrime >=1.2.5

Required By

• bioconductor-xde

• bioconductor-dapar

• bioconductor-desousa2013

• bioconductor-trio

• r-metaboanalyst

• bioconductor-minfi

• bioconductor-kcsmart

• bioconductor-coexnet

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-siggenes

and update with:

conda update bioconductor-siggenes

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-siggenes:<tag>

(see bioconductor-siggenes/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-siggenes/README.html)