Package Recipe 'bioconductor-sigsquared'

recipe bioconductor-sigsquared

Gene signature generation for functionally validated signaling pathways

Homepage: https://bioconductor.org/packages/3.14/bioc/html/sigsquared.html
License: GPL version 3
Recipe: /bioconductor-sigsquared/meta.yaml

By leveraging statistical properties (log-rank test for survival) of patient cohorts defined by binary thresholds, poor-prognosis patients are identified by the sigsquared package via optimization over a cost function reducing type I and II error.

package bioconductor-sigsquared¶

Versions

1.26.0-0, 1.24.0-0, 1.22.0-1, 1.22.0-0, 1.20.0-0, 1.18.0-0, 1.16.0-1, 1.14.0-0

Depends

bioconductor-biobase >=2.54.0,<2.55.0
r-base >=4.1,<4.2.0a0
r-survival

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-sigsquared

and update with:

conda update bioconductor-sigsquared

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-sigsquared:<tag>

(see bioconductor-sigsquared/tags for valid values for <tag>)

Download stats¶

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-sigsquared/README.html)