- recipe bioconductor-simbu
Simulate Bulk RNA-seq Datasets from Single-Cell Datasets
- Homepage:
- License:
GPL-3 + file LICENSE
- Recipe:
SimBu can be used to simulate bulk RNA-seq datasets with known cell type fractions. You can either use your own single-cell study for the simulation or the sfaira database. Different pre-defined simulation scenarios exist, as are options to run custom simulations. Additionally, expression values can be adapted by adding an mRNA bias, which produces more biologically relevant simulations.
- package bioconductor-simbu¶
-
- Versions:
1.0.0-0
- Depends:
bioconductor-basilisk
>=1.9.0,<1.10.0
bioconductor-biocparallel
>=1.32.0,<1.33.0
bioconductor-phyloseq
>=1.42.0,<1.43.0
bioconductor-sparsematrixstats
>=1.10.0,<1.11.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
r-base
>=4.2,<4.3.0a0
r-matrix
>=1.3.3
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-simbu
and update with:
conda update bioconductor-simbu
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-simbu:<tag>
(see bioconductor-simbu/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-simbu/README.html)