recipe bioconductor-simbu

Simulate Bulk RNA-seq Datasets from Single-Cell Datasets

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/SimBu.html

License:

GPL-3 + file LICENSE

Recipe:

/bioconductor-simbu/meta.yaml

SimBu can be used to simulate bulk RNA-seq datasets with known cell type fractions. You can either use your own single-cell study for the simulation or the sfaira database. Different pre-defined simulation scenarios exist, as are options to run custom simulations. Additionally, expression values can be adapted by adding an mRNA bias, which produces more biologically relevant simulations.

package bioconductor-simbu

(downloads) docker_bioconductor-simbu

Versions:

1.0.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-simbu

and update with:

conda update bioconductor-simbu

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-simbu:<tag>

(see bioconductor-simbu/tags for valid values for <tag>)

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