recipe bioconductor-single.mtec.transcriptomes

Single Cell Transcriptome Data and Analysis of Mouse mTEC cells

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/Single.mTEC.Transcriptomes.html

License:

LGPL

Recipe:

/bioconductor-single.mtec.transcriptomes/meta.yaml

This data package contains the code used to analyse the single-cell RNA-seq and the bulk ATAC-seq data from the manuscript titled: Single-cell transcriptome analysis reveals coordinated ectopic-gene expression patterns in medullary thymic epithelial cells. This paper was published in Nature Immunology 16,933-941(2015). The data objects provided in this package has been pre-processed: the raw data files can be downloaded from ArrayExpress under the accession identifiers E-MTAB-3346 and E-MTAB-3624. The vignette of this data package provides a documented and reproducible workflow that includes the code that was used to generate each statistic and figure from the manuscript.

package bioconductor-single.mtec.transcriptomes

(downloads) docker_bioconductor-single.mtec.transcriptomes

Versions:
1.25.0-0,  1.22.0-1,  1.22.0-0,  1.20.0-0,  1.18.0-1,  1.18.0-0,  1.17.0-0,  1.16.0-0,  1.14.0-0, 

1.25.0-0,  1.22.0-1,  1.22.0-0,  1.20.0-0,  1.18.0-1,  1.18.0-0,  1.17.0-0,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.12.0-0,  1.10.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-single.mtec.transcriptomes

and update with:

conda update bioconductor-single.mtec.transcriptomes

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-single.mtec.transcriptomes:<tag>

(see bioconductor-single.mtec.transcriptomes/tags for valid values for <tag>)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-single.mtec.transcriptomes/README.html)