- recipe bioconductor-single.mtec.transcriptomes
Single Cell Transcriptome Data and Analysis of Mouse mTEC cells
- Homepage:
https://bioconductor.org/packages/3.16/data/experiment/html/Single.mTEC.Transcriptomes.html
- License:
LGPL
- Recipe:
This data package contains the code used to analyse the single-cell RNA-seq and the bulk ATAC-seq data from the manuscript titled: Single-cell transcriptome analysis reveals coordinated ectopic-gene expression patterns in medullary thymic epithelial cells. This paper was published in Nature Immunology 16,933-941(2015). The data objects provided in this package has been pre-processed: the raw data files can be downloaded from ArrayExpress under the accession identifiers E-MTAB-3346 and E-MTAB-3624. The vignette of this data package provides a documented and reproducible workflow that includes the code that was used to generate each statistic and figure from the manuscript.
- package bioconductor-single.mtec.transcriptomes¶
-
- Versions:
1.25.0-0
,1.22.0-1
,1.22.0-0
,1.20.0-0
,1.18.0-1
,1.18.0-0
,1.17.0-0
,1.16.0-0
,1.14.0-0
,1.25.0-0
,1.22.0-1
,1.22.0-0
,1.20.0-0
,1.18.0-1
,1.18.0-0
,1.17.0-0
,1.16.0-0
,1.14.0-0
,1.12.0-1
,1.12.0-0
,1.10.0-0
- Depends:
bioconductor-data-packages
>=20221103
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-single.mtec.transcriptomes
and update with:
conda update bioconductor-single.mtec.transcriptomes
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-single.mtec.transcriptomes:<tag>
(see bioconductor-single.mtec.transcriptomes/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-single.mtec.transcriptomes/README.html)