recipe bioconductor-single

Accurate consensus sequence from nanopore reads of a gene library

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/single.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-single/meta.yaml

Accurate consensus sequence from nanopore reads of a DNA gene library. SINGLe corrects for systematic errors in nanopore sequencing reads of gene libraries and it retrieves true consensus sequences of variants identified by a barcode, needing only a few reads per variant. More information in preprint doi: https://doi.org/10.1101/2020.03.25.007146.

package bioconductor-single

Versions:

1.2.0-0

Depends:

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-genomicalignments >=1.34.0,<1.35.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-rsamtools >=2.14.0,<2.15.0

• r-base >=4.2,<4.3.0a0

• r-dplyr

• r-reshape2

• r-rlang

• r-stringr

• r-tidyr

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-single

and update with:

conda update bioconductor-single

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-single:<tag>

(see bioconductor-single/tags for valid values for <tag>)

Download stats

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