- recipe bioconductor-single
Accurate consensus sequence from nanopore reads of a gene library
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/single.html
- License:
MIT + file LICENSE
- Recipe:
Accurate consensus sequence from nanopore reads of a DNA gene library. SINGLe corrects for systematic errors in nanopore sequencing reads of gene libraries and it retrieves true consensus sequences of variants identified by a barcode, needing only a few reads per variant. More information in preprint doi: https://doi.org/10.1101/2020.03.25.007146.
- package bioconductor-single¶
-
- Versions:
1.2.0-0
- Depends:
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-biostrings
>=2.66.0,<2.67.0
bioconductor-genomicalignments
>=1.34.0,<1.35.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-rsamtools
>=2.14.0,<2.15.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-single
and update with:
conda update bioconductor-single
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-single:<tag>
(see bioconductor-single/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-single/README.html)