recipe bioconductor-singlecellexperiment

Defines a S4 class for storing data from single-cell experiments. This includes specialized methods to store and retrieve spike-in information, dimensionality reduction coordinates and size factors for each cell, along with the usual metadata for genes and libraries.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/SingleCellExperiment.html

License

GPL-3

Recipe

/bioconductor-singlecellexperiment/meta.yaml

package bioconductor-singlecellexperiment

(downloads) docker_bioconductor-singlecellexperiment

Versions

1.4.0-0, 1.2.0-0, 1.0.0-1, 1.0.0-0

Depends bioconductor-biocgenerics

>=0.28.0,<0.29.0

Depends bioconductor-s4vectors

>=0.20.0,<0.21.0

Depends bioconductor-summarizedexperiment

>=1.12.0,<1.13.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-singlecellexperiment

and update with:

conda update bioconductor-singlecellexperiment

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-singlecellexperiment:<tag>

(see bioconductor-singlecellexperiment/tags for valid values for <tag>)

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-singlecellexperiment/README.html)