Package Recipe 'bioconductor-singlecellexperiment'

recipe bioconductor-singlecellexperiment

S4 Classes for Single Cell Data

Homepage:: https://bioconductor.org/packages/3.16/bioc/html/SingleCellExperiment.html
License:: GPL-3
Recipe:: /bioconductor-singlecellexperiment/meta.yaml

Defines a S4 class for storing data from single-cell experiments. This includes specialized methods to store and retrieve spike-in information, dimensionality reduction coordinates and size factors for each cell, along with the usual metadata for genes and libraries.

package bioconductor-singlecellexperiment¶

Versions:

1.20.0-0, 1.16.0-0, 1.14.1-0, 1.12.0-1, 1.12.0-0, 1.10.1-0, 1.8.0-0, 1.6.0-1, 1.4.0-0,

1.20.0-0, 1.16.0-0, 1.14.1-0, 1.12.0-1, 1.12.0-0, 1.10.1-0, 1.8.0-0, 1.6.0-1, 1.4.0-0, 1.2.0-0, 1.0.0-1, 1.0.0-0

Depends:

bioconductor-biocgenerics >=0.44.0,<0.45.0
bioconductor-delayedarray >=0.24.0,<0.25.0
bioconductor-genomicranges >=1.50.0,<1.51.0
bioconductor-s4vectors >=0.36.0,<0.37.0
bioconductor-summarizedexperiment >=1.28.0,<1.29.0
r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-singlecellexperiment

and update with:

conda update bioconductor-singlecellexperiment

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-singlecellexperiment:<tag>

(see bioconductor-singlecellexperiment/tags for valid values for <tag>)

Download stats¶

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-singlecellexperiment/README.html)