- recipe bioconductor-singlecellexperiment
S4 Classes for Single Cell Data
- Homepage:
https://bioconductor.org/packages/3.14/bioc/html/SingleCellExperiment.html
- License:
GPL-3
- Recipe:
Defines a S4 class for storing data from single-cell experiments. This includes specialized methods to store and retrieve spike-in information, dimensionality reduction coordinates and size factors for each cell, along with the usual metadata for genes and libraries.
- package bioconductor-singlecellexperiment¶
-
- Versions:
1.16.0-0
,1.14.1-0
,1.12.0-1
,1.12.0-0
,1.10.1-0
,1.8.0-0
,1.6.0-1
,1.4.0-0
,1.2.0-0
,1.16.0-0
,1.14.1-0
,1.12.0-1
,1.12.0-0
,1.10.1-0
,1.8.0-0
,1.6.0-1
,1.4.0-0
,1.2.0-0
,1.0.0-1
,1.0.0-0
- Depends:
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-delayedarray
>=0.20.0,<0.21.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
r-base
>=4.1,<4.2.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-singlecellexperiment
and update with:
conda update bioconductor-singlecellexperiment
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-singlecellexperiment:<tag>
(see bioconductor-singlecellexperiment/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-singlecellexperiment/README.html)