recipe bioconductor-sispa

SISPA: Method for Sample Integrated Set Profile Analysis

Homepage

https://bioconductor.org/packages/3.14/bioc/html/SISPA.html

License

GPL-2

Recipe

/bioconductor-sispa/meta.yaml

Links

biotools: sispa, doi: 10.1093/nar/gkv1503

Sample Integrated Set Profile Analysis (SISPA) is a method designed to define sample groups with similar gene set enrichment profiles.

package bioconductor-sispa

Versions

1.24.0-0,  1.22.0-0,  1.20.0-1,  1.20.0-0,  1.18.0-0,  1.16.0-0,  1.14.0-1,  1.12.0-0,  1.10.0-0, 

1.24.0-0,  1.22.0-0,  1.20.0-1,  1.20.0-0,  1.18.0-0,  1.16.0-0,  1.14.0-1,  1.12.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-0

Depends

• bioconductor-genefilter >=1.76.0,<1.77.0

• bioconductor-gsva >=1.42.0,<1.43.0

• r-base >=4.1,<4.2.0a0

• r-changepoint

• r-data.table

• r-ggplot2

• r-plyr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-sispa

and update with:

conda update bioconductor-sispa

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-sispa:<tag>

(see bioconductor-sispa/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-sispa/README.html)