recipe bioconductor-sispa

SISPA: Method for Sample Integrated Set Profile Analysis

Homepage

https://bioconductor.org/packages/3.11/bioc/html/SISPA.html

License

GPL-2

Recipe

/bioconductor-sispa/meta.yaml

Links

biotools: sispa, doi: 10.1093/nar/gkv1503

Sample Integrated Set Profile Analysis (SISPA) is a method designed to define sample groups with similar gene set enrichment profiles.

package bioconductor-sispa

Versions

1.18.0-0, 1.16.0-0, 1.14.0-1, 1.12.0-0, 1.10.0-0, 1.8.0-0, 1.6.0-0

Depends

• bioconductor-genefilter >=1.70.0,<1.71.0

• bioconductor-gsva >=1.36.0,<1.37.0

• r-base >=4.0,<4.1.0a0

• r-changepoint

• r-data.table

• r-ggplot2

• r-plyr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-sispa

and update with:

conda update bioconductor-sispa

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-sispa:<tag>

(see bioconductor-sispa/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-sispa/README.html)