recipe bioconductor-sispa

Sample Integrated Set Profile Analysis (SISPA) is a method designed to define sample groups with similar gene set enrichment profiles.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/SISPA.html

License

GPL-2

Recipe

/bioconductor-sispa/meta.yaml

Links

biotools: sispa, doi: 10.1093/nar/gkv1503

package bioconductor-sispa

Versions

1.12.0-0, 1.10.0-0, 1.8.0-0, 1.6.0-0

Depends

• bioconductor-genefilter >=1.64.0,<1.65.0

• bioconductor-gsva >=1.30.0,<1.31.0

• r-base >=3.5.1,<3.5.2.0a0

• r-changepoint

• r-data.table

• r-ggplot2

• r-plyr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-sispa

and update with:

conda update bioconductor-sispa

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-sispa:<tag>

(see bioconductor-sispa/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-sispa/README.html)