recipe bioconductor-slalom

slalom is a scalable modelling framework for single-cell RNA-seq data that uses gene set annotations to dissect single-cell transcriptome heterogeneity, thereby allowing to identify biological drivers of cell-to-cell variability and model confounding factors.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/slalom.html

License

GPL-2

Recipe

/bioconductor-slalom/meta.yaml

package bioconductor-slalom

Versions

1.6.0-1, 1.4.1-0, 1.4.0-0

Depends

• bioconductor-gseabase >=1.46.0,<1.47.0

• bioconductor-singlecellexperiment >=1.6.0,<1.7.0

• bioconductor-summarizedexperiment >=1.14.0,<1.15.0

• libgcc-ng >=7.3.0

• libstdcxx-ng >=7.3.0

• r-base >=3.6,<3.7.0a0

• r-bh

• r-ggplot2

• r-rcpp >=0.12.8

• r-rcpparmadillo

• r-rsvd

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-slalom

and update with:

conda update bioconductor-slalom

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-slalom:<tag>

(see bioconductor-slalom/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-slalom/README.html)