- recipe bioconductor-slingshot
Tools for ordering single-cell sequencing
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/slingshot.html
- License
Artistic-2.0
- Recipe
Provides functions for inferring continuous, branching lineage structures in low-dimensional data. Slingshot was designed to model developmental trajectories in single-cell RNA sequencing data and serve as a component in an analysis pipeline after dimensionality reduction and clustering. It is flexible enough to handle arbitrarily many branching events and allows for the incorporation of prior knowledge through supervised graph construction.
- package bioconductor-slingshot¶
-
- Versions
2.2.0-0
,2.0.0-0
,1.8.0-1
,1.8.0-0
,1.6.0-0
,1.4.0-0
,1.2.0-1
,1.0.0-0
- Depends
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-singlecellexperiment
>=1.16.0,<1.17.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
bioconductor-trajectoryutils
>=1.2.0,<1.3.0
r-base
>=4.1,<4.2.0a0
r-princurve
>=2.0.4
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-slingshot
and update with:
conda update bioconductor-slingshot
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-slingshot:<tag>
(see bioconductor-slingshot/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-slingshot/README.html)