recipe bioconductor-snagee

Signal-to-Noise applied to Gene Expression Experiments

Homepage

https://bioconductor.org/packages/3.11/bioc/html/SNAGEE.html

License

Artistic-2.0

Recipe

/bioconductor-snagee/meta.yaml

Links

biotools: snagee, doi: 10.1371/journal.pone.0051013

Signal-to-Noise applied to Gene Expression Experiments. Signal-to-noise ratios can be used as a proxy for quality of gene expression studies and samples. The SNRs can be calculated on any gene expression data set as long as gene IDs are available, no access to the raw data files is necessary. This allows to flag problematic studies and samples in any public data set.

package bioconductor-snagee

Versions

1.28.0-0,  1.26.0-1,  1.24.0-1,  1.24.0-0,  1.22.0-0,  1.20.0-0,  1.18.0-0

Depends

• bioconductor-snageedata >=1.24.0,<1.25.0

• r-base >=4.0,<4.1.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-snagee

and update with:

conda update bioconductor-snagee

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-snagee:<tag>

(see bioconductor-snagee/tags for valid values for <tag>)

Link to this page

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