recipe bioconductor-snapcount

R/Bioconductor Package for interfacing with Snaptron for rapid querying of expression counts

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/snapcount.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-snapcount/meta.yaml

snapcount is a client interface to the Snaptron webservices which support querying by gene name or genomic region. Results include raw expression counts derived from alignment of RNA-seq samples and/or various summarized measures of expression across one or more regions/genes per-sample (e.g. percent spliced in).

package bioconductor-snapcount

(downloads) docker_bioconductor-snapcount

Versions:

1.6.0-01.4.0-01.2.0-11.2.0-01.0.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-snapcount

and update with:

conda update bioconductor-snapcount

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-snapcount:<tag>

(see bioconductor-snapcount/tags for valid values for <tag>)

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