- recipe bioconductor-snapcount
R/Bioconductor Package for interfacing with Snaptron for rapid querying of expression counts
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/snapcount.html
- License:
MIT + file LICENSE
- Recipe:
snapcount is a client interface to the Snaptron webservices which support querying by gene name or genomic region. Results include raw expression counts derived from alignment of RNA-seq samples and/or various summarized measures of expression across one or more regions/genes per-sample (e.g. percent spliced in).
- package bioconductor-snapcount¶
-
- Versions:
1.10.0-0
,1.6.0-0
,1.4.0-0
,1.2.0-1
,1.2.0-0
,1.0.0-0
- Depends:
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-snapcount
and update with:
conda update bioconductor-snapcount
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-snapcount:<tag>
(see bioconductor-snapcount/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-snapcount/README.html)