recipe bioconductor-snapcount

R/Bioconductor Package for interfacing with Snaptron for rapid querying of expression counts

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/snapcount.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-snapcount/meta.yaml

snapcount is a client interface to the Snaptron webservices which support querying by gene name or genomic region. Results include raw expression counts derived from alignment of RNA-seq samples and/or various summarized measures of expression across one or more regions/genes per-sample (e.g. percent spliced in).

package bioconductor-snapcount

Versions:

1.10.0-0,  1.6.0-0,  1.4.0-0,  1.2.0-1,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• r-assertthat

• r-base >=4.2,<4.3.0a0

• r-data.table

• r-httr

• r-jsonlite

• r-magrittr

• r-matrix

• r-purrr

• r-r6

• r-rlang

• r-stringr

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-snapcount

and update with:

conda update bioconductor-snapcount

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-snapcount:<tag>

(see bioconductor-snapcount/tags for valid values for <tag>)

Download stats

Link to this page

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