recipe bioconductor-snpediar

Query data from SNPedia

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/SNPediaR.html

License:

GPL-2

Recipe:

/bioconductor-snpediar/meta.yaml

Links:

biotools: snpediar, doi: 10.1007/978-1-4419-9863-7_1039

SNPediaR provides some tools for downloading and parsing data from the SNPedia web site <http://www.snpedia.com>. The implemented functions allow users to import the wiki text available in SNPedia pages and to extract the most relevant information out of them. If some information in the downloaded pages is not automatically processed by the library functions, users can easily implement their own parsers to access it in an efficient way.

package bioconductor-snpediar

(downloads) docker_bioconductor-snpediar

versions:
1.28.0-0,  1.26.0-0,  1.24.0-0,  1.20.0-0,  1.18.0-0,  1.16.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-0, 

1.28.0-0,  1.26.0-0,  1.24.0-0,  1.20.0-0,  1.18.0-0,  1.16.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.10.0-0,  1.8.0-0,  1.6.0-0,  1.4.0-0,  1.2.0-0

depends r-base:

>=4.3,<4.4.0a0

depends r-jsonlite:

depends r-rcurl:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-snpediar

and update with::

   mamba update bioconductor-snpediar

To create a new environment, run:

mamba create --name myenvname bioconductor-snpediar

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-snpediar:<tag>

(see `bioconductor-snpediar/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-snpediar/README.html)