- recipe bioconductor-snplocs.hsapiens.dbsnp150.grch38
SNP locations for Homo sapiens (dbSNP Build 150)
- Homepage:
https://bioconductor.org/packages/3.16/data/annotation/html/SNPlocs.Hsapiens.dbSNP150.GRCh38.html
- License:
Artistic-2.0
- Recipe:
SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 150. The source data files used for this package were created by NCBI between March 12-14, 2017, and contain SNPs mapped to reference genome GRCh38.p7 (a patched version of GRCh38 that doesn't alter chromosomes 1-22, X, Y, MT). Note that these SNPs can be "injected" in BSgenome.Hsapiens.NCBI.GRCh38 or in BSgenome.Hsapiens.UCSC.hg38.
- package bioconductor-snplocs.hsapiens.dbsnp150.grch38¶
-
- Versions:
0.99.20-10
,0.99.20-9
,0.99.20-8
,0.99.20-7
,0.99.20-6
,0.99.20-5
,0.99.20-3
,0.99.20-2
,0.99.20-0
- Depends:
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-bsgenome
>=1.66.0,<1.67.0
bioconductor-data-packages
>=20221103
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-snplocs.hsapiens.dbsnp150.grch38
and update with:
conda update bioconductor-snplocs.hsapiens.dbsnp150.grch38
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-snplocs.hsapiens.dbsnp150.grch38:<tag>
(see bioconductor-snplocs.hsapiens.dbsnp150.grch38/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
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