recipe bioconductor-snpstats

Classes and statistical methods for large SNP association studies. This extends the earlier snpMatrix package, allowing for uncertainty in genotypes.

Homepage

https://bioconductor.org/packages/3.8/bioc/html/snpStats.html

License

GPL-3

Recipe

/bioconductor-snpstats/meta.yaml

Links

biotools: snpstats, doi: 10.1038/nmeth.3252

package bioconductor-snpstats

Versions

1.32.0-0, 1.30.0-0, 1.28.0-1, 1.28.0-0, 1.26.0-0

Depends

• bioconductor-biocgenerics >=0.28.0,<0.29.0

• bioconductor-zlibbioc >=1.28.0,<1.29.0

• libgcc-ng >=7.3.0

• r-base >=3.5.1,<3.5.2.0a0

• r-matrix

• r-survival

Required By

• bioconductor-martini

• r-fgwas

• bioconductor-ggtools

• bioconductor-ggbase

• bioconductor-funcisnp

• bioconductor-gwascat

• r-coloc

• bioconductor-ggdata

• bioconductor-rvs

• bioconductor-scoreinvhap

• bioconductor-genegeneinter

• bioconductor-ldblock

• bioconductor-gqtlstats

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-snpstats

and update with:

conda update bioconductor-snpstats

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-snpstats:<tag>

(see bioconductor-snpstats/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-snpstats/README.html)