recipe bioconductor-snpstats

SnpMatrix and XSnpMatrix classes and methods

Homepage

https://bioconductor.org/packages/3.12/bioc/html/snpStats.html

License

GPL-3

Recipe

/bioconductor-snpstats/meta.yaml

Links

biotools: snpstats, doi: 10.1038/nmeth.3252

Classes and statistical methods for large SNP association studies. This extends the earlier snpMatrix package, allowing for uncertainty in genotypes.

package bioconductor-snpstats

Versions

1.40.0-1,  1.40.0-0,  1.38.0-0,  1.36.0-0,  1.34.0-1,  1.32.0-0,  1.30.0-0,  1.28.0-1,  1.28.0-0, 

1.40.0-1,  1.40.0-0,  1.38.0-0,  1.36.0-0,  1.34.0-1,  1.32.0-0,  1.30.0-0,  1.28.0-1,  1.28.0-0,  1.26.0-0

Depends

• bioconductor-biocgenerics >=0.36.0,<0.37.0

• bioconductor-zlibbioc >=1.36.0,<1.37.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=9.3.0

• liblapack >=3.8.0,<4.0a0

• r-base >=4.0,<4.1.0a0

• r-matrix

• r-survival

Required By

• bioconductor-gwascat

• bioconductor-martini

• r-fgwas

• r-genomictools

• bioconductor-ggdata

• bioconductor-scoreinvhap

• r-coloc

• bioconductor-ggbase

• bioconductor-ldblock

• bioconductor-rvs

• r-genomictools.filehandler

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-snpstats

and update with:

conda update bioconductor-snpstats

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-snpstats:<tag>

(see bioconductor-snpstats/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-snpstats/README.html)