recipe bioconductor-soggi

The soGGi package provides a toolset to create genomic interval aggregate/summary plots of signal or motif occurence from BAM and bigWig files as well as PWM, rlelist, GRanges and GAlignments Bioconductor objects. soGGi allows for normalisation, transformation and arithmetic operation on and between summary plot objects as well as grouping and subsetting of plots by GRanges objects and user supplied metadata. Plots are created using the GGplot2 libary to allow user defined manipulation of the returned plot object. Coupled together, soGGi features a broad set of methods to visualise genomics data in the context of groups of genomic intervals such as genes, superenhancers and transcription factor binding events.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/soGGi.html

License

GPL (>= 3)

Recipe

/bioconductor-soggi/meta.yaml

Links

biotools: soggi, doi: 10.1038/nmeth.3252

package bioconductor-soggi

(downloads) docker_bioconductor-soggi

Versions

1.14.0-0, 1.12.0-0, 1.10.0-0, 1.8.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-soggi

and update with:

conda update bioconductor-soggi

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-soggi:<tag>

(see bioconductor-soggi/tags for valid values for <tag>)