- recipe bioconductor-spaniel
Spatial Transcriptomics Analysis
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/Spaniel.html
- License:
MIT + file LICENSE
- Recipe:
Spaniel includes a series of tools to aid the quality control and analysis of Spatial Transcriptomics data. Spaniel can import data from either the original Spatial Transcriptomics system or 10X Visium technology. The package contains functions to create a SingleCellExperiment Seurat object and provides a method of loading a histologial image into R. The spanielPlot function allows visualisation of metrics contained within the S4 object overlaid onto the image of the tissue.
- package bioconductor-spaniel¶
-
- Versions:
1.12.0-0
,1.8.0-0
,1.6.0-0
,1.4.0-1
,1.4.0-0
,1.2.0-0
,1.0.0-0
- Depends:
bioconductor-dropletutils
>=1.18.0,<1.19.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-scater
>=1.26.0,<1.27.0
bioconductor-scran
>=1.26.0,<1.27.0
bioconductor-singlecellexperiment
>=1.20.0,<1.21.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-spaniel
and update with:
conda update bioconductor-spaniel
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-spaniel:<tag>
(see bioconductor-spaniel/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-spaniel/README.html)