recipe bioconductor-sparrow

Take command of set enrichment analyses through a unified interface

Homepage

https://bioconductor.org/packages/3.14/bioc/html/sparrow.html

License

MIT + file LICENSE

Recipe

/bioconductor-sparrow/meta.yaml

Provides a unified interface to a variety of GSEA techniques from different bioconductor packages. Results are harmonized into a single object and can be interrogated uniformly for quick exploration and interpretation of results. Interactive exploration of GSEA results is enabled through a shiny app provided by a sparrow.shiny sibling package.

package bioconductor-sparrow

Versions

1.0.1-0

Depends

• bioconductor-biocgenerics >=0.40.0,<0.41.0

• bioconductor-biocparallel >=1.28.0,<1.29.0

• bioconductor-biocset >=1.8.0,<1.9.0

• bioconductor-complexheatmap >=2.10.0,<2.11.0

• bioconductor-delayedmatrixstats >=1.16.0,<1.17.0

• bioconductor-edger >=3.36.0,<3.37.0

• bioconductor-gseabase >=1.56.0,<1.57.0

• bioconductor-limma >=3.50.0,<3.51.0

• r-babelgene >=21.4

• r-base >=4.1,<4.2.0a0

• r-checkmate

• r-circlize

• r-data.table >=1.10.4

• r-ggplot2 >=2.2.0

• r-irlba

• r-matrix

• r-plotly >=4.9.0

• r-viridis

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-sparrow

and update with:

conda update bioconductor-sparrow

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-sparrow:<tag>

(see bioconductor-sparrow/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-sparrow/README.html)