- recipe bioconductor-spatialde
R wrapper for SpatialDE
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/spatialDE.html
- License:
MIT + file LICENSE
- Recipe:
SpatialDE is a method to find spatially variable genes (SVG) from spatial transcriptomics data. This package provides wrappers to use the Python SpatialDE library in R, using reticulate and basilisk.
- package bioconductor-spatialde¶
-
- Versions:
1.4.0-0
,1.0.0-0
- Depends:
bioconductor-basilisk
>=1.9.0,<1.10.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-spatialexperiment
>=1.8.0,<1.9.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-spatialde
and update with:
conda update bioconductor-spatialde
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-spatialde:<tag>
(see bioconductor-spatialde/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-spatialde/README.html)