recipe bioconductor-spatialde

R wrapper for SpatialDE

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/spatialDE.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-spatialde/meta.yaml

SpatialDE is a method to find spatially variable genes (SVG) from spatial transcriptomics data. This package provides wrappers to use the Python SpatialDE library in R, using reticulate and basilisk.

package bioconductor-spatialde

(downloads) docker_bioconductor-spatialde

Versions:

1.4.0-01.0.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-spatialde

and update with:

conda update bioconductor-spatialde

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-spatialde:<tag>

(see bioconductor-spatialde/tags for valid values for <tag>)

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