- recipe bioconductor-spatialexperiment
S4 Class for Spatial Experiments handling
- Homepage:
https://bioconductor.org/packages/3.14/bioc/html/SpatialExperiment.html
- License:
GPL-3
- Recipe:
Defines S4 classes for storing data for spatial experiments. Main examples are reported by using seqFISH and 10x-Visium Spatial Gene Expression data. This includes specialized methods for storing, retrieving spatial coordinates, 10x dedicated parameters and their handling.
- package bioconductor-spatialexperiment¶
-
- Versions:
1.4.0-0
,1.2.0-0
,1.0.0-1
,1.0.0-0
- Depends:
bioconductor-biocfilecache
>=2.2.0,<2.3.0
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-dropletutils
>=1.14.0,<1.15.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-singlecellexperiment
>=1.16.0,<1.17.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
r-base
>=4.1,<4.2.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-spatialexperiment
and update with:
conda update bioconductor-spatialexperiment
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-spatialexperiment:<tag>
(see bioconductor-spatialexperiment/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-spatialexperiment/README.html)