recipe bioconductor-spatialfeatureexperiment

Integrating SpatialExperiment with Simple Features in sf

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/SpatialFeatureExperiment.html

License:

Artistic-2.0

Recipe:

/bioconductor-spatialfeatureexperiment/meta.yaml

A new S4 class integrating Simple Features with the R package sf to bring geospatial data analysis methods based on vector data to spatial transcriptomics. Also implements management of spatial neighborhood graphs and geometric operations. This pakage builds upon SpatialExperiment and SingleCellExperiment, hence methods for these parent classes can still be used.

package bioconductor-spatialfeatureexperiment

Versions:

1.0.0-0

Depends:

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-singlecellexperiment >=1.20.0,<1.21.0

• bioconductor-spatialexperiment >=1.8.0,<1.9.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• r-base >=4.2,<4.3.0a0

• r-rjson

• r-sf

• r-spdep >=1.1-7

Required By:

• bioconductor-voyager

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-spatialfeatureexperiment

and update with:

conda update bioconductor-spatialfeatureexperiment

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-spatialfeatureexperiment:<tag>

(see bioconductor-spatialfeatureexperiment/tags for valid values for <tag>)

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