- recipe bioconductor-spatialfeatureexperiment
Integrating SpatialExperiment with Simple Features in sf
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/SpatialFeatureExperiment.html
- License:
Artistic-2.0
- Recipe:
A new S4 class integrating Simple Features with the R package sf to bring geospatial data analysis methods based on vector data to spatial transcriptomics. Also implements management of spatial neighborhood graphs and geometric operations. This pakage builds upon SpatialExperiment and SingleCellExperiment, hence methods for these parent classes can still be used.
- package bioconductor-spatialfeatureexperiment¶
-
- Versions:
1.0.0-0
- Depends:
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-biocparallel
>=1.32.0,<1.33.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-singlecellexperiment
>=1.20.0,<1.21.0
bioconductor-spatialexperiment
>=1.8.0,<1.9.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
r-base
>=4.2,<4.3.0a0
r-spdep
>=1.1-7
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-spatialfeatureexperiment
and update with:
conda update bioconductor-spatialfeatureexperiment
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-spatialfeatureexperiment:<tag>
(see bioconductor-spatialfeatureexperiment/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-spatialfeatureexperiment/README.html)