recipe bioconductor-specl

specL - Prepare Peptide Spectrum Matches for Use in Targeted Proteomics

Homepage

https://bioconductor.org/packages/3.11/bioc/html/specL.html

License

GPL-3

Recipe

/bioconductor-specl/meta.yaml

Links

biotools: specl

provides a functions for generating spectra libraries that can be used for MRM SRM MS workflows in proteomics. The package provides a BiblioSpec reader, a function which can add the protein information using a FASTA formatted amino acid file, and an export method for using the created library in the Spectronaut software. The package is developed, tested and used at the Functional Genomics Center Zurich <http://www.fgcz.ethz.ch>.

package bioconductor-specl

(downloads) docker_bioconductor-specl

Versions

1.22.0-0, 1.20.0-0, 1.18.0-1, 1.16.1-0, 1.14.0-0, 1.12.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-specl

and update with:

conda update bioconductor-specl

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-specl:<tag>

(see bioconductor-specl/tags for valid values for <tag>)