recipe bioconductor-spectra

Spectra Infrastructure for Mass Spectrometry Data

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/Spectra.html

License:

Artistic-2.0

Recipe:

/bioconductor-spectra/meta.yaml

The Spectra package defines an efficient infrastructure for storing and handling mass spectrometry spectra and functionality to subset, process, visualize and compare spectra data. It provides different implementations (backends) to store mass spectrometry data. These comprise backends tuned for fast data access and processing and backends for very large data sets ensuring a small memory footprint.

package bioconductor-spectra

versions:

1.12.0-0,  1.10.1-0,  1.8.0-0,  1.4.0-0,  1.2.0-0,  1.0.5-0,  1.0.0-0

depends bioconductor-biocgenerics:

>=0.48.0,<0.49.0

depends bioconductor-biocparallel:

>=1.36.0,<1.37.0

depends bioconductor-iranges:

>=2.36.0,<2.37.0

depends bioconductor-metabocoreutils:

>=1.10.0,<1.11.0

depends bioconductor-mscoreutils:

>=1.14.0,<1.15.0

depends bioconductor-protgenerics:

>=1.34.0,<1.35.0

depends bioconductor-s4vectors:

>=0.40.0,<0.41.0

depends r-base:

>=4.3,<4.4.0a0

depends r-fs:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-spectra

and update with::

   mamba update bioconductor-spectra

To create a new environment, run:

mamba create --name myenvname bioconductor-spectra

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-spectra:<tag>

(see `bioconductor-spectra/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-spectra/README.html)