recipe bioconductor-spectraql

MassQL support for Spectra

Homepage:

https://bioconductor.org/packages/3.20/bioc/html/SpectraQL.html

License:

Artistic-2.0

Recipe:

/bioconductor-spectraql/meta.yaml

The Mass Spec Query Language (MassQL) is a domain-specific language enabling to express a query and retrieve mass spectrometry (MS) data in a more natural and understandable way for MS users. It is inspired by SQL and is by design programming language agnostic. The SpectraQL package adds support for the MassQL query language to R, in particular to MS data represented by Spectra objects. Users can thus apply MassQL expressions to analyze and retrieve specific data from Spectra objects.

package bioconductor-spectraql

(downloads) docker_bioconductor-spectraql

versions:

1.0.0-0

depends bioconductor-mscoreutils:

>=1.18.0,<1.19.0

depends bioconductor-protgenerics:

>=1.38.0,<1.39.0

depends bioconductor-spectra:

>=1.16.0,<1.17.0

depends r-base:

>=4.4,<4.5.0a0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-spectraql

and update with::

   mamba update bioconductor-spectraql

To create a new environment, run:

mamba create --name myenvname bioconductor-spectraql

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-spectraql:<tag>

(see `bioconductor-spectraql/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-spectraql/README.html)