recipe bioconductor-spem

S-system parameter estimation method

Homepage

https://bioconductor.org/packages/3.14/bioc/html/SPEM.html

License

GPL-2

Recipe

/bioconductor-spem/meta.yaml

Links

biotools: spem, doi: 10.1089/cmb.2011.0269

This package can optimize the parameter in S-system models given time series data

package bioconductor-spem

Versions

1.34.0-0,  1.32.0-0,  1.30.0-1,  1.30.0-0,  1.28.0-0,  1.26.0-0,  1.24.0-1,  1.22.0-0,  1.20.0-0, 

1.34.0-0,  1.32.0-0,  1.30.0-1,  1.30.0-0,  1.28.0-0,  1.26.0-0,  1.24.0-1,  1.22.0-0,  1.20.0-0,  1.18.0-0,  1.16.0-0

Depends

• bioconductor-biobase >=2.54.0,<2.55.0

• r-base >=4.1,<4.2.0a0

• r-rsolnp

Required By

• bioconductor-tmixclust

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-spem

and update with:

conda update bioconductor-spem

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-spem:<tag>

(see bioconductor-spem/tags for valid values for <tag>)

Download stats

Link to this page

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