recipe bioconductor-spem

S-system parameter estimation method

Homepage

https://bioconductor.org/packages/3.12/bioc/html/SPEM.html

License

GPL-2

Recipe

/bioconductor-spem/meta.yaml

Links

biotools: spem, doi: 10.1089/cmb.2011.0269

This package can optimize the parameter in S-system models given time series data

package bioconductor-spem

Versions

1.30.0-0,  1.28.0-0,  1.26.0-0,  1.24.0-1,  1.22.0-0,  1.20.0-0,  1.18.0-0,  1.16.0-0

Depends

• bioconductor-biobase >=2.50.0,<2.51.0

• r-base >=4.0,<4.1.0a0

• r-rsolnp

Required By

• bioconductor-tmixclust

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-spem

and update with:

conda update bioconductor-spem

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-spem:<tag>

(see bioconductor-spem/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-spem/README.html)