- recipe bioconductor-spia
Signaling Pathway Impact Analysis (SPIA) using combined evidence of pathway over-representation and unusual signaling perturbations
- Homepage:
- License:
file LICENSE
- Recipe:
- Links:
biotools: spia, doi: 10.1093/bioinformatics/btn577
This package implements the Signaling Pathway Impact Analysis (SPIA) which uses the information form a list of differentially expressed genes and their log fold changes together with signaling pathways topology, in order to identify the pathways most relevant to the condition under the study.
- package bioconductor-spia¶
-
- Versions:
2.46.0-0
,2.44.0-0
,2.42.0-1
,2.42.0-0
,2.40.0-0
,2.38.0-0
,2.36.0-1
,2.34.0-0
,2.32.0-0
,2.46.0-0
,2.44.0-0
,2.42.0-1
,2.42.0-0
,2.40.0-0
,2.38.0-0
,2.36.0-1
,2.34.0-0
,2.32.0-0
,2.30.0-0
,2.28.0-0
- Depends:
bioconductor-kegggraph
>=1.54.0,<1.55.0
r-base
>=4.1,<4.2.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-spia
and update with:
conda update bioconductor-spia
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-spia:<tag>
(see bioconductor-spia/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-spia/README.html)